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EEE 575

Medical Image Reconstruction and Processing

EEE 575 treats medical imaging as an inverse problem: you're handed incomplete, noisy measurements from MRI, CT, or MPI scanners and have to recover a faithful image, which means thinking carefully about sampling, Fourier-domain encoding, and the priors that make reconstruction well-posed. Expect five homeworks and a project where you actually implement the core machinery — gridding/NUFFT for non-Cartesian data, SENSE/GRAPPA for parallel imaging, compressed sensing recovery, and registration/segmentation on the post-processing side. It's a graduate elective that assumes you're comfortable with signals, linear algebra, and a bit of optimization, and it's the natural bridge from classical DSP into the reconstruction pipelines used in clinical scanners and modern imaging research.

Credit3ECTS5FacultyFaculty of EngineeringBölümElectrical and Electronics Engineering

Değerlendirme 100% — 4 adım

40%
40%
10%
10%
Homework Bi-weekly homeworks 40%
Quiz Quiz related to homeworks 40%
Project Term project 10%
Presentations Project Presentation and Interview 10%

Önerilen kaynaklar 2 kitap

📖
Önerilen
Handbook of MRI Pulse Sequences
Matt Bernstein, Kevin King
Xiaohong Zhou · 1st edition
📖
Önerilen
Medical Image Analysis
Atam P. Dhawan
2nd Edition · John Wiley & Sons

Haftalık müfredat 14 hafta

Hafta 1
Introduction, Multi-dimensional Fourier Transform
Hafta 2
Imaging overview: MRI, CT, MPI
Hafta 3
Cartesian Sampling and Reconstruction, Data sampling and reconstruction in 1D, Data sampling and reconstruction in 2D/3D
Hafta 4
Image and Frequency Domain Reconstruction: Projection reconstruction (CT, MPI), Partial Fourier reconstruction in MRI
Hafta 5
Image and Frequency Domain Reconstruction: Non-Cartesian reconstructions: gridding, NUFFT, Examples from MRI, MPI and CT
Hafta 6
Improving Image Quality: Image denoising, Image deconvolution
Hafta 7
Improving Image Quality: Off-resonance correction in MRI, Correction of timing errors
Hafta 8
Parallel Imaging: Encoding in Image and Frequency Domains, Phased-arrays in MRI
Hafta 9
Parallel Imaging: SENSE and GRAPPA algorithms, Coil compression
Hafta 10
Compressed Sensing: Random undersampling
Hafta 11
Compressed Sensing: Sparsity/compressibility and nonlinear recovery, Model-based reconstructions
Hafta 12
Medical Image Registration: Rigid and non-rigid registration, Surface-based registration
Hafta 13
Medical Image Registration: Multi-modal registration and image fusion
Hafta 14
Medical Image Segmentation: Edge-based and region-based segmentation, Atlas-based segmentation, Computer-aided diagnosis

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All homework assignments should be completed and submitted. Grades, except for the final project, should justify a letter grade of D or better.

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