defter*
defter / katalog / MBG 513
MBG 513

Bioinformatics

MBG 513 is about turning biological data into answers — learning how to ask the right computational questions of genomes, transcriptomes, and protein networks rather than just running tools blindly. You'll spend most of your time in R (tidyverse plus Bioconductor) working through NGS pipelines, differential expression, clustering, dimension reduction, and functional enrichment, with hands-on practice reinforced by take-home exams, five homeworks, and a presentation tied to a primary-literature reading. Coming in with molecular biology fundamentals, this is the course that bridges wet-lab thinking and data science, and it's the foundation almost any modern MBG thesis or downstream omics work will lean on.

Credit3ECTS5FacultyFaculty of ScienceBölümMolecular Biology and Genetics

Değerlendirme 100% — 4 adım

30%
30%
20%
20%
Midterm:Open-Book 1 midterm 30 pts 30%
Final:Take-home Final Project R based 30%
Homework R practice in lab and worksheets 20%
Oral presentation paper presentation 20%

Önerilen kaynaklar 2 kitap

📕
Zorunlu
Introduction to Data Science Part 1
Irizzary
📕
Zorunlu
Introduction to Data Science II
Irizzary

Haftalık müfredat 14 hafta

Hafta 1
Intro to molecular data; Syllabus
Hafta 2
Next generation sequencing
Hafta 3
Genomic variation; biomart; Midterm Reading 1: Giraffe Genome
Hafta 4
Transcriptomics; Presentation I
Hafta 5
Hypothesis testing; Differentially Expressed Genes (DEGs); Presentation II
Hafta 6
Clustering; Presentation III; Midterm Reading II
Hafta 7
Dimension reduction; Presentation IV and V
Hafta 8
Functional Enrichment and Systems Biology; Presentation VI; Midterm Reading III
Hafta 9
NO CLASS WEEK
Hafta 10
MIDTERM; R practice I: vectors, matrices, dataframes, lists, Rmarkdown
Hafta 11
R practice II: intermediate R: conditionals, loops, apply, functions
Hafta 12
R practice III; tidyverse: dplyr and ggplot2
Hafta 13
R practice IV, various bioconductor packages
Hafta 14
R practice V: various bioconductor packages

Ders notları — henüz yok

MBG 513 için defter ekibi henüz not yazmadı.

İlk dosyayı sen atarsan — not, slayt, geçmiş sınav, çözüm, cheat-sheet, ne varsa — defter ekibi öğrenci paylaşımlarından bu dersin notlarını yazar. Drive linki / PDF / ZIP, hepsi olur.

← katalog

Geçmiş GPA dağılımı 16 dönem · ort. 3.78

DönemCourse CPA
2024-2025 Spring 3.89 1 sec · 22 öğr
2023-2024 Spring 3.90 1 sec · 21 öğr
2022-2023 Spring 3.92 1 sec · 15 öğr
2021-2022 Spring 3.93 1 sec · 17 öğr
2020-2021 Spring 3.96 1 sec · 7 öğr
2019-2020 Spring 3.88 1 sec · 14 öğr
2018-2019 Spring 3.36 1 sec · 7 öğr
2017-2018 Spring 3.61 1 sec · 16 öğr
2016-2017 Spring 3.68 1 sec · 11 öğr
2015-2016 Spring 3.80 1 sec · 16 öğr

Aggregate course GPA — Bilkent STARS'tan public data. Hoca-bazlı per-section detayı için STARS evaluation report →. Öğrenci anket cevapları KVKK kapsamında defter'de tutulmaz.

⚠️ FZ engelleyen şartlar

Course Learning Outcomes: Course Learning Outcome Assessment access online databases 1 midterm 30 pts R practice in lab and worksheets practice sequence alignment, phylogeny and motif finding 1 midterm 30 pts apply online tools for a biological problem 1 midterm 30 pts R practice in lab and worksheets analyze DNA sequences 1 midterm 30 pts R practice in lab and worksheets apply univariate statistics to biological data 1 midterm 30 pts R practice in lab and worksheets extract data from genomic an

Hocalar 1 bu dönem · 1 geçmiş

Bu dönem (2025-2026 Spring) · 1 section
Özlen Konu Karakayalı
Geçmişte ders veren (1 kişi)
Rengül Çetin-Atalay